Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC125807.1-201ENST00000483097 614 ntBASIC20.7■□□□□ 0.9
CACNA1FO60840 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.7■□□□□ 0.9
CACNA1FO60840 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.7■□□□□ 0.9
CACNA1FO60840 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CACNA1FO60840 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.7■□□□□ 0.9
CACNA1FO60840 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.7■□□□□ 0.9
CACNA1FO60840 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.7■□□□□ 0.9
CACNA1FO60840 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.7■□□□□ 0.9
CACNA1FO60840 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
CACNA1FO60840 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC20.7■□□□□ 0.9
CACNA1FO60840 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.7■□□□□ 0.9
CACNA1FO60840 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC20.7■□□□□ 0.9
CACNA1FO60840 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.7■□□□□ 0.9
CACNA1FO60840 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CACNA1FO60840 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CACNA1FO60840 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CACNA1FO60840 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CACNA1FO60840 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CACNA1FO60840 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.69■□□□□ 0.9
CACNA1FO60840 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CACNA1FO60840 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CACNA1FO60840 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CACNA1FO60840 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CACNA1FO60840 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 AC097493.3-201ENST00000509725 367 ntBASIC20.69■□□□□ 0.9
CACNA1FO60840 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CACNA1FO60840 AC073592.8-201ENST00000624126 511 ntBASIC20.69■□□□□ 0.9
CACNA1FO60840 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CACNA1FO60840 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.69■□□□□ 0.9
CACNA1FO60840 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CACNA1FO60840 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 AZGP1P1-201ENST00000411909 902 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.68■□□□□ 0.9
CACNA1FO60840 AL355385.1-201ENST00000606123 409 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 AL096865.1-201ENST00000606796 927 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.68■□□□□ 0.9
CACNA1FO60840 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CACNA1FO60840 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.68■□□□□ 0.9
CACNA1FO60840 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.68■□□□□ 0.9
CACNA1FO60840 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 MTND6P24-201ENST00000440466 518 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 AC004890.2-204ENST00000481968 304 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.68■□□□□ 0.9
CACNA1FO60840 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC20.68■□□□□ 0.9
CACNA1FO60840 AC010336.2-201ENST00000564226 506 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC20.68■□□□□ 0.9
CACNA1FO60840 AC004840.1-201ENST00000636359 365 ntBASIC20.68■□□□□ 0.9
CACNA1FO60840 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.68■□□□□ 0.9
CACNA1FO60840 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC20.68■□□□□ 0.9
CACNA1FO60840 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.68■□□□□ 0.9
CACNA1FO60840 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CACNA1FO60840 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
CACNA1FO60840 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CACNA1FO60840 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CACNA1FO60840 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms