Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LMX1BO60663 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC14.7□□□□□ -0.06
LMX1BO60663 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.7□□□□□ -0.06
LMX1BO60663 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 AC073592.4-201ENST00000623827 446 ntBASIC14.7□□□□□ -0.06
LMX1BO60663 AC107918.4-202ENST00000641623 219 ntBASIC14.7□□□□□ -0.06
LMX1BO60663 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.7□□□□□ -0.06
LMX1BO60663 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.7□□□□□ -0.06
LMX1BO60663 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.7□□□□□ -0.06
LMX1BO60663 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LMX1BO60663 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LMX1BO60663 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.7□□□□□ -0.06
LMX1BO60663 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.7□□□□□ -0.06
LMX1BO60663 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.7□□□□□ -0.06
LMX1BO60663 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LMX1BO60663 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 AL590787.1-201ENST00000568856 1315 ntBASIC14.69□□□□□ -0.06
LMX1BO60663 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.69□□□□□ -0.06
LMX1BO60663 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 HMGN1P19-201ENST00000436976 333 ntBASIC14.69□□□□□ -0.06
LMX1BO60663 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.69□□□□□ -0.06
LMX1BO60663 AC004967.1-201ENST00000453589 447 ntBASIC14.69□□□□□ -0.06
LMX1BO60663 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 AP002490.2-201ENST00000524791 560 ntBASIC14.69□□□□□ -0.06
LMX1BO60663 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 UNC93B6-202ENST00000528242 690 ntBASIC14.69□□□□□ -0.06
LMX1BO60663 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC14.69□□□□□ -0.06
LMX1BO60663 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 AL355385.1-201ENST00000606123 409 ntBASIC14.69□□□□□ -0.06
LMX1BO60663 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
LMX1BO60663 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LMX1BO60663 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LMX1BO60663 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms