Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 AC078925.2-201ENST00000624013 1973 ntBASIC18.2■□□□□ 0.5
CLDN3O15551 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CLDN3O15551 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CLDN3O15551 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CLDN3O15551 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CLDN3O15551 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.19■□□□□ 0.5
CLDN3O15551 RPS8P6-201ENST00000426177 609 ntBASIC18.19■□□□□ 0.5
CLDN3O15551 ADH5P3-201ENST00000433842 1137 ntBASIC18.19■□□□□ 0.5
CLDN3O15551 AP006288.1-201ENST00000446065 395 ntBASIC18.19■□□□□ 0.5
CLDN3O15551 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.19■□□□□ 0.5
CLDN3O15551 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.19■□□□□ 0.5
CLDN3O15551 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.19■□□□□ 0.5
CLDN3O15551 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.19■□□□□ 0.5
CLDN3O15551 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CLDN3O15551 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 AKAP8P1-201ENST00000434743 1349 ntBASIC18.19■□□□□ 0.5
CLDN3O15551 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLDN3O15551 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CLDN3O15551 WASH6P-202ENST00000359512 1437 ntBASIC18.18■□□□□ 0.5
CLDN3O15551 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.18■□□□□ 0.5
CLDN3O15551 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 TFAMP1-201ENST00000412727 736 ntBASIC18.18■□□□□ 0.5
CLDN3O15551 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.18■□□□□ 0.5
CLDN3O15551 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 AC026120.1-201ENST00000611536 926 ntBASIC18.18■□□□□ 0.5
CLDN3O15551 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.18■□□□□ 0.5
CLDN3O15551 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.18■□□□□ 0.5
CLDN3O15551 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLDN3O15551 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms