Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 UBALD1-205ENST00000590891 2641 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 AC108751.1-201ENST00000490852 363 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 MIR4751-201ENST00000578027 74 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 AC009948.4-201ENST00000604692 675 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 ME2P1-201ENST00000426028 1970 ntBASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS9D1Q9Y2B5 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AC012569.1-201ENST00000591191 1524 ntBASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 FAM185BP-201ENST00000443595 716 ntBASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 MIR7706-201ENST00000613747 67 ntBASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 AL512652.2-201ENST00000625156 1716 ntBASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS9D1Q9Y2B5 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS9D1Q9Y2B5 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms