Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 CYP2T1P-202ENST00000641596 2535 ntBASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
BLOC1S4Q9NUP1 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 AC099522.2-201ENST00000607001 744 ntBASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.49■□□□□ 0.55
BLOC1S4Q9NUP1 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.48■□□□□ 0.55
BLOC1S4Q9NUP1 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 AC040169.1-201ENST00000565382 521 ntBASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
BLOC1S4Q9NUP1 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms