Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC00304-203ENST00000565008 1864 ntBASIC14.36□□□□□ -0.11
COL12A1Q99715 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL12A1Q99715 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.35□□□□□ -0.11
COL12A1Q99715 YBX1P6-201ENST00000442962 1002 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.35□□□□□ -0.11
COL12A1Q99715 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 FTLP1-201ENST00000449155 526 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.35□□□□□ -0.11
COL12A1Q99715 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.35□□□□□ -0.11
COL12A1Q99715 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC14.35□□□□□ -0.11
COL12A1Q99715 AC004461.2-201ENST00000629517 803 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL12A1Q99715 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 AL607033.1-201ENST00000623900 1599 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC14.35□□□□□ -0.11
COL12A1Q99715 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 AC114501.1-201ENST00000445949 172 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 UPF3AP2-201ENST00000457924 1132 ntBASIC14.35□□□□□ -0.11
COL12A1Q99715 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.35□□□□□ -0.11
COL12A1Q99715 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.35□□□□□ -0.11
COL12A1Q99715 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.35□□□□□ -0.11
COL12A1Q99715 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL12A1Q99715 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL12A1Q99715 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL12A1Q99715 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.34□□□□□ -0.11
COL12A1Q99715 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.34□□□□□ -0.11
COL12A1Q99715 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.34□□□□□ -0.11
COL12A1Q99715 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.34□□□□□ -0.11
COL12A1Q99715 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.34□□□□□ -0.11
COL12A1Q99715 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.34□□□□□ -0.11
COL12A1Q99715 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
COL12A1Q99715 AC097724.1-201ENST00000609581 426 ntBASIC14.34□□□□□ -0.11
COL12A1Q99715 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.34□□□□□ -0.11
COL12A1Q99715 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL12A1Q99715 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.34□□□□□ -0.11
COL12A1Q99715 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL12A1Q99715 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL12A1Q99715 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.33□□□□□ -0.11
COL12A1Q99715 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.33□□□□□ -0.11
COL12A1Q99715 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.33□□□□□ -0.11
COL12A1Q99715 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.11
COL12A1Q99715 FNTAP2-201ENST00000430308 634 ntBASIC14.33□□□□□ -0.11
COL12A1Q99715 AL162726.2-201ENST00000438986 1017 ntBASIC14.33□□□□□ -0.11
COL12A1Q99715 SERBP1P3-201ENST00000459980 809 ntBASIC14.33□□□□□ -0.11
COL12A1Q99715 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.33□□□□□ -0.11
COL12A1Q99715 AC091804.1-201ENST00000486888 567 ntBASIC14.33□□□□□ -0.11
COL12A1Q99715 AC068587.3-201ENST00000526613 355 ntBASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms