Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 GK-202ENST00000378941 458 ntTSL 3 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 MTND6P24-201ENST00000440466 518 ntBASIC16.89■□□□□ 0.29
CHFRQ96EP1 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 TUBB8P12-201ENST00000308911 1335 ntBASIC16.89■□□□□ 0.29
CHFRQ96EP1 TUBB7P-202ENST00000428444 1305 ntBASIC16.89■□□□□ 0.29
CHFRQ96EP1 TUBB8P7-204ENST00000567960 1332 ntBASIC16.89■□□□□ 0.29
CHFRQ96EP1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.89■□□□□ 0.29
CHFRQ96EP1 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHFRQ96EP1 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 PCDHB17P-201ENST00000539533 2393 ntBASIC16.88■□□□□ 0.29
CHFRQ96EP1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 NME2P1-201ENST00000426182 414 ntBASIC16.88■□□□□ 0.29
CHFRQ96EP1 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC004233.3-201ENST00000607794 1269 ntBASIC16.88■□□□□ 0.29
CHFRQ96EP1 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC004790.1-201ENST00000612686 536 ntBASIC16.88■□□□□ 0.29
CHFRQ96EP1 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 AC004840.1-201ENST00000636359 365 ntBASIC16.88■□□□□ 0.29
CHFRQ96EP1 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.88■□□□□ 0.29
CHFRQ96EP1 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHFRQ96EP1 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 AL080243.2-201ENST00000418783 582 ntBASIC16.87■□□□□ 0.29
CHFRQ96EP1 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 AL353705.2-201ENST00000428243 662 ntBASIC16.87■□□□□ 0.29
CHFRQ96EP1 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CHFRQ96EP1 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.87■□□□□ 0.29
CHFRQ96EP1 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms