Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 FOXO1B-201ENST00000504678 1527 ntBASIC16.67■□□□□ 0.26
HMGB4Q8WW32 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 MTND6P24-201ENST00000440466 518 ntBASIC16.67■□□□□ 0.26
HMGB4Q8WW32 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 HLA-V-204ENST00000476601 1289 ntBASIC16.67■□□□□ 0.26
HMGB4Q8WW32 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 AC025048.6-201ENST00000634326 1161 ntBASIC16.67■□□□□ 0.26
HMGB4Q8WW32 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGB4Q8WW32 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 NOC2LP1-202ENST00000452600 2235 ntBASIC16.66■□□□□ 0.26
HMGB4Q8WW32 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGB4Q8WW32 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 AC073439.1-201ENST00000624121 1774 ntBASIC16.65■□□□□ 0.26
HMGB4Q8WW32 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 RN7SL692P-201ENST00000464677 288 ntBASIC16.65■□□□□ 0.26
HMGB4Q8WW32 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGB4Q8WW32 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms