Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.97■□□□□ 0.31
USP39Q53GS9 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
USP39Q53GS9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.96■□□□□ 0.31
USP39Q53GS9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
USP39Q53GS9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
USP39Q53GS9 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
USP39Q53GS9 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.96■□□□□ 0.31
USP39Q53GS9 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
USP39Q53GS9 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.96■□□□□ 0.31
USP39Q53GS9 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.96■□□□□ 0.31
USP39Q53GS9 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.96■□□□□ 0.31
USP39Q53GS9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
USP39Q53GS9 LINC02560-201ENST00000596379 459 ntBASIC16.96■□□□□ 0.31
USP39Q53GS9 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 AL158211.3-201ENST00000607385 239 ntBASIC16.96■□□□□ 0.31
USP39Q53GS9 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 AC008761.3-201ENST00000624803 892 ntBASIC16.96■□□□□ 0.31
USP39Q53GS9 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
USP39Q53GS9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 AD000864.1-201ENST00000624076 2295 ntBASIC16.96■□□□□ 0.31
USP39Q53GS9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP39Q53GS9 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
USP39Q53GS9 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.3
USP39Q53GS9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
USP39Q53GS9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.96■□□□□ 0.3
USP39Q53GS9 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.96■□□□□ 0.3
USP39Q53GS9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
USP39Q53GS9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USP39Q53GS9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USP39Q53GS9 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.95■□□□□ 0.3
USP39Q53GS9 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
USP39Q53GS9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.95■□□□□ 0.3
USP39Q53GS9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.95■□□□□ 0.3
USP39Q53GS9 AC069120.2-201ENST00000524091 540 ntBASIC16.95■□□□□ 0.3
USP39Q53GS9 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
USP39Q53GS9 AC109635.5-201ENST00000533593 962 ntBASIC16.95■□□□□ 0.3
USP39Q53GS9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.95■□□□□ 0.3
USP39Q53GS9 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.95■□□□□ 0.3
USP39Q53GS9 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.95■□□□□ 0.3
USP39Q53GS9 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
USP39Q53GS9 AC084121.4-201ENST00000641598 221 ntBASIC16.95■□□□□ 0.3
USP39Q53GS9 AF228730.8-201ENST00000642140 221 ntBASIC16.95■□□□□ 0.3
USP39Q53GS9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP39Q53GS9 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USP39Q53GS9 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.95■□□□□ 0.3
USP39Q53GS9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.94■□□□□ 0.3
USP39Q53GS9 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.94■□□□□ 0.3
USP39Q53GS9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP39Q53GS9 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms