Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 AC092580.3-201ENST00000430932 139 ntBASIC17.69■□□□□ 0.42
USP41Q3LFD5 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 UGT1A2P-201ENST00000454886 866 ntBASIC17.69■□□□□ 0.42
USP41Q3LFD5 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 AC003101.2-201ENST00000612557 442 ntBASIC17.69■□□□□ 0.42
USP41Q3LFD5 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.69■□□□□ 0.42
USP41Q3LFD5 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP41Q3LFD5 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 FAM207CP-201ENST00000443486 507 ntBASIC17.68■□□□□ 0.42
USP41Q3LFD5 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP41Q3LFD5 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.68■□□□□ 0.42
USP41Q3LFD5 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 AC241585.1-201ENST00000433527 519 ntBASIC17.67■□□□□ 0.42
USP41Q3LFD5 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.67■□□□□ 0.42
USP41Q3LFD5 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP41Q3LFD5 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.67■□□□□ 0.42
USP41Q3LFD5 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms