Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.51□□□□□ -0.25
CX3CL1P78423 AP001005.1-201ENST00000571755 1248 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.51□□□□□ -0.25
CX3CL1P78423 PGM5P2-202ENST00000637225 1043 ntBASIC13.51□□□□□ -0.25
CX3CL1P78423 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
CX3CL1P78423 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CX3CL1P78423 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.51□□□□□ -0.25
CX3CL1P78423 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
CX3CL1P78423 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CX3CL1P78423 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.5□□□□□ -0.25
CX3CL1P78423 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.5□□□□□ -0.25
CX3CL1P78423 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 FUK-207ENST00000571514 3054 ntTSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.5□□□□□ -0.25
CX3CL1P78423 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 SLC25A6P4-201ENST00000586535 553 ntBASIC13.5□□□□□ -0.25
CX3CL1P78423 AL121894.2-201ENST00000602977 491 ntBASIC13.5□□□□□ -0.25
CX3CL1P78423 GGTLC5P-201ENST00000617623 998 ntBASIC13.5□□□□□ -0.25
CX3CL1P78423 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 AC005593.1-201ENST00000624894 515 ntBASIC13.5□□□□□ -0.25
CX3CL1P78423 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
CX3CL1P78423 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.5□□□□□ -0.25
CX3CL1P78423 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CX3CL1P78423 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CX3CL1P78423 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 AC092910.1-201ENST00000482027 1129 ntBASIC13.49□□□□□ -0.25
CX3CL1P78423 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.49□□□□□ -0.25
CX3CL1P78423 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CX3CL1P78423 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.49□□□□□ -0.25
CX3CL1P78423 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.49□□□□□ -0.25
CX3CL1P78423 AL049840.3-201ENST00000602669 611 ntBASIC13.49□□□□□ -0.25
CX3CL1P78423 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
CX3CL1P78423 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC13.49□□□□□ -0.25
CX3CL1P78423 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms