Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.59□□□□□ -0.39
FOXA3P55318 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.59□□□□□ -0.39
FOXA3P55318 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 PEX7-202ENST00000367756 680 ntTSL 3 BASIC12.59□□□□□ -0.39
FOXA3P55318 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 RBM17P1-201ENST00000453646 1190 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 AP003071.4-201ENST00000562276 1284 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 AC111152.3-201ENST00000569699 673 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 AP000525.1-201ENST00000608286 694 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 AL049637.2-201ENST00000641778 930 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 AL139011.1-202ENST00000642063 584 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 AL009178.2-201ENST00000597278 2719 ntBASIC12.59□□□□□ -0.39
FOXA3P55318 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.59□□□□□ -0.39
FOXA3P55318 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA3P55318 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
FOXA3P55318 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.39
FOXA3P55318 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
FOXA3P55318 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 AL135999.2-201ENST00000622438 1686 ntBASIC12.58□□□□□ -0.4
FOXA3P55318 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.58□□□□□ -0.4
FOXA3P55318 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 OR2I1P-209ENST00000641730 5365 ntBASIC12.58□□□□□ -0.4
FOXA3P55318 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
FOXA3P55318 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.58□□□□□ -0.4
FOXA3P55318 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA3P55318 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 AC103564.2-201ENST00000432853 1299 ntBASIC12.58□□□□□ -0.4
FOXA3P55318 AC034232.1-201ENST00000506026 1064 ntBASIC12.58□□□□□ -0.4
FOXA3P55318 EGLN1P1-201ENST00000531623 762 ntBASIC12.58□□□□□ -0.4
FOXA3P55318 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 AL049757.1-201ENST00000616842 1596 ntBASIC12.58□□□□□ -0.4
FOXA3P55318 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
FOXA3P55318 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA3P55318 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA3P55318 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.58□□□□□ -0.4
FOXA3P55318 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA3P55318 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms