Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.47■□□□□ 0.55
TPM1P09493 AL020989.1-201ENST00000422979 469 ntBASIC18.47■□□□□ 0.55
TPM1P09493 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
TPM1P09493 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.47■□□□□ 0.55
TPM1P09493 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 AC063952.2-201ENST00000498792 1227 ntBASIC18.47■□□□□ 0.55
TPM1P09493 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.47■□□□□ 0.55
TPM1P09493 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TPM1P09493 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.47■□□□□ 0.55
TPM1P09493 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TPM1P09493 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.46■□□□□ 0.55
TPM1P09493 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 AC023824.1-201ENST00000562945 2975 ntBASIC18.46■□□□□ 0.55
TPM1P09493 PAUPAR-201ENST00000630360 2965 ntBASIC18.46■□□□□ 0.55
TPM1P09493 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TPM1P09493 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.46■□□□□ 0.55
TPM1P09493 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TPM1P09493 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
TPM1P09493 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
TPM1P09493 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.45■□□□□ 0.54
TPM1P09493 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 TK2-221ENST00000620035 5060 ntTSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.45■□□□□ 0.54
TPM1P09493 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 TP73-AS1-210ENST00000637775 1455 ntBASIC18.45■□□□□ 0.54
TPM1P09493 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC18.45■□□□□ 0.54
TPM1P09493 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TPM1P09493 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TPM1P09493 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms