Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC12.99□□□□□ -0.33
CXCL1P09341 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC12.99□□□□□ -0.33
CXCL1P09341 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.99□□□□□ -0.33
CXCL1P09341 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC12.99□□□□□ -0.33
CXCL1P09341 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.99□□□□□ -0.33
CXCL1P09341 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 ING5-213ENST00000636051 4199 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
CXCL1P09341 UNC93B2-201ENST00000285383 730 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC12.98□□□□□ -0.33
CXCL1P09341 C2orf69P3-201ENST00000565542 1120 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 NEK4P2-201ENST00000580004 1012 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC12.98□□□□□ -0.33
CXCL1P09341 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.98□□□□□ -0.33
CXCL1P09341 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC12.98□□□□□ -0.33
CXCL1P09341 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 AC026471.5-201ENST00000615068 467 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 AL049637.2-201ENST00000641778 930 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 AC005252.3-201ENST00000623855 2258 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.98□□□□□ -0.33
CXCL1P09341 CICP23-201ENST00000605013 2741 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 AL109954.1-202ENST00000564051 2148 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 AC005912.2-201ENST00000619492 2400 ntBASIC12.98□□□□□ -0.33
CXCL1P09341 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC12.98□□□□□ -0.33
CXCL1P09341 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC12.98□□□□□ -0.33
CXCL1P09341 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CXCL1P09341 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms