Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.22■□□□□ 0.51
CLDN3O15551 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.22■□□□□ 0.51
CLDN3O15551 FAM86C2P-203ENST00000528684 1004 ntBASIC18.22■□□□□ 0.51
CLDN3O15551 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.22■□□□□ 0.51
CLDN3O15551 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
CLDN3O15551 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.22■□□□□ 0.51
CLDN3O15551 AL691403.2-201ENST00000618460 490 ntBASIC18.22■□□□□ 0.51
CLDN3O15551 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CLDN3O15551 UBALD1-205ENST00000590891 2641 ntBASIC18.22■□□□□ 0.51
CLDN3O15551 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.22■□□□□ 0.51
CLDN3O15551 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CLDN3O15551 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC18.22■□□□□ 0.51
CLDN3O15551 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.22■□□□□ 0.51
CLDN3O15551 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CLDN3O15551 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CLDN3O15551 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 TNRC18P3-201ENST00000441896 2691 ntBASIC18.21■□□□□ 0.51
CLDN3O15551 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.21■□□□□ 0.51
CLDN3O15551 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 AL355306.1-201ENST00000415580 579 ntBASIC18.21■□□□□ 0.51
CLDN3O15551 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.21■□□□□ 0.51
CLDN3O15551 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 CCND1-203ENST00000536559 553 ntTSL 3 BASIC18.21■□□□□ 0.51
CLDN3O15551 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.21■□□□□ 0.51
CLDN3O15551 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CLDN3O15551 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CLDN3O15551 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.21■□□□□ 0.51
CLDN3O15551 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CLDN3O15551 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.21■□□□□ 0.51
CLDN3O15551 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.21■□□□□ 0.51
CLDN3O15551 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 AL118508.1-201ENST00000613502 2345 ntBASIC18.21■□□□□ 0.51
CLDN3O15551 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CLDN3O15551 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
CLDN3O15551 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.2■□□□□ 0.5
CLDN3O15551 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLDN3O15551 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.2■□□□□ 0.5
CLDN3O15551 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.2■□□□□ 0.5
CLDN3O15551 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.2■□□□□ 0.5
CLDN3O15551 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CLDN3O15551 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC18.2■□□□□ 0.5
CLDN3O15551 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.2■□□□□ 0.5
CLDN3O15551 RARRES2P8-201ENST00000566335 367 ntBASIC18.2■□□□□ 0.5
CLDN3O15551 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
CLDN3O15551 AC079781.4-201ENST00000641908 219 ntBASIC18.2■□□□□ 0.5
CLDN3O15551 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.2■□□□□ 0.5
CLDN3O15551 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
CLDN3O15551 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms