Protein–RNA interactions for Protein: Q7RTT3

SSX9, Protein SSX9, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9Q7RTT3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SSX9Q7RTT3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SSX9Q7RTT3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.53■□□□□ 0.72
SSX9Q7RTT3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.53■□□□□ 0.72
SSX9Q7RTT3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SSX9Q7RTT3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SSX9Q7RTT3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX9Q7RTT3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
SSX9Q7RTT3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SSX9Q7RTT3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SSX9Q7RTT3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SSX9Q7RTT3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.52■□□□□ 0.72
SSX9Q7RTT3 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
SSX9Q7RTT3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
SSX9Q7RTT3 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
SSX9Q7RTT3 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SSX9Q7RTT3 AC096887.2-201ENST00000623443 1957 ntBASIC19.52■□□□□ 0.71
SSX9Q7RTT3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX9Q7RTT3 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SSX9Q7RTT3 MIR3648-2-201ENST00000581792 180 ntBASIC19.51■□□□□ 0.71
SSX9Q7RTT3 MIR3648-1-201ENST00000615959 180 ntBASIC19.51■□□□□ 0.71
SSX9Q7RTT3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SSX9Q7RTT3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.51■□□□□ 0.71
SSX9Q7RTT3 CLDN5-201ENST00000403084 2357 ntBASIC19.51■□□□□ 0.71
SSX9Q7RTT3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SSX9Q7RTT3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SSX9Q7RTT3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 AC126177.7-201ENST00000547904 679 ntBASIC19.5■□□□□ 0.71
SSX9Q7RTT3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SSX9Q7RTT3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.49■□□□□ 0.71
SSX9Q7RTT3 AC016575.1-201ENST00000607026 382 ntBASIC19.49■□□□□ 0.71
SSX9Q7RTT3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SSX9Q7RTT3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX9Q7RTT3 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SSX9Q7RTT3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX9Q7RTT3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SSX9Q7RTT3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SSX9Q7RTT3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.48■□□□□ 0.71
SSX9Q7RTT3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SSX9Q7RTT3 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SSX9Q7RTT3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SSX9Q7RTT3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.47■□□□□ 0.71
SSX9Q7RTT3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX9Q7RTT3 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX9Q7RTT3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
SSX9Q7RTT3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX9Q7RTT3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.46■□□□□ 0.71
SSX9Q7RTT3 AC022211.4-201ENST00000625094 2161 ntBASIC19.46■□□□□ 0.71
SSX9Q7RTT3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SSX9Q7RTT3 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.45■□□□□ 0.7
SSX9Q7RTT3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSX9Q7RTT3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSX9Q7RTT3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSX9Q7RTT3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.45■□□□□ 0.7
SSX9Q7RTT3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.45■□□□□ 0.7
SSX9Q7RTT3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 AC142381.3-201ENST00000568208 1670 ntBASIC19.44■□□□□ 0.7
SSX9Q7RTT3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSX9Q7RTT3 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.43■□□□□ 0.7
SSX9Q7RTT3 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSX9Q7RTT3 AC133561.1-201ENST00000568600 2415 ntBASIC19.42■□□□□ 0.7
SSX9Q7RTT3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms