Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.13■□□□□ 0.65
CX3CL1P78423 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CX3CL1P78423 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.13■□□□□ 0.65
CX3CL1P78423 RAP2CP1-202ENST00000605179 643 ntBASIC19.13■□□□□ 0.65
CX3CL1P78423 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CX3CL1P78423 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.13■□□□□ 0.65
CX3CL1P78423 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
CX3CL1P78423 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CX3CL1P78423 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CX3CL1P78423 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.12■□□□□ 0.65
CX3CL1P78423 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.12■□□□□ 0.65
CX3CL1P78423 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CX3CL1P78423 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CX3CL1P78423 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CX3CL1P78423 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CX3CL1P78423 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.11■□□□□ 0.65
CX3CL1P78423 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CX3CL1P78423 AC133552.2-201ENST00000619106 1032 ntBASIC19.11■□□□□ 0.65
CX3CL1P78423 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CX3CL1P78423 AC009831.1-201ENST00000580420 1582 ntBASIC19.1■□□□□ 0.65
CX3CL1P78423 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CX3CL1P78423 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CX3CL1P78423 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CX3CL1P78423 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CX3CL1P78423 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CX3CL1P78423 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CX3CL1P78423 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CX3CL1P78423 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.09■□□□□ 0.65
CX3CL1P78423 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CX3CL1P78423 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CX3CL1P78423 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CX3CL1P78423 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CX3CL1P78423 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.09■□□□□ 0.65
CX3CL1P78423 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.08■□□□□ 0.65
CX3CL1P78423 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CX3CL1P78423 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CX3CL1P78423 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CX3CL1P78423 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CX3CL1P78423 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CX3CL1P78423 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CX3CL1P78423 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CX3CL1P78423 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CX3CL1P78423 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.07■□□□□ 0.64
CX3CL1P78423 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CX3CL1P78423 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.07■□□□□ 0.64
CX3CL1P78423 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CX3CL1P78423 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CX3CL1P78423 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CX3CL1P78423 AC096887.2-201ENST00000623443 1957 ntBASIC19.06■□□□□ 0.64
CX3CL1P78423 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CX3CL1P78423 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.06■□□□□ 0.64
CX3CL1P78423 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CX3CL1P78423 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CX3CL1P78423 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CX3CL1P78423 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CX3CL1P78423 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.05■□□□□ 0.64
CX3CL1P78423 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CX3CL1P78423 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CX3CL1P78423 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 ABHD17AP5-201ENST00000580133 923 ntBASIC19.04■□□□□ 0.64
CX3CL1P78423 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.04■□□□□ 0.64
CX3CL1P78423 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CX3CL1P78423 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CX3CL1P78423 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.03■□□□□ 0.64
CX3CL1P78423 U85056.1-201ENST00000616429 682 ntBASIC19.03■□□□□ 0.64
CX3CL1P78423 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
CX3CL1P78423 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CX3CL1P78423 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CX3CL1P78423 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CX3CL1P78423 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CX3CL1P78423 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CX3CL1P78423 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CX3CL1P78423 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CX3CL1P78423 AL592293.1-201ENST00000502889 1188 ntBASIC19.02■□□□□ 0.64
CX3CL1P78423 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CX3CL1P78423 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CX3CL1P78423 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms