Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
RNF4P78317 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RNF4P78317 AC010980.1-201ENST00000587192 1142 ntBASIC22.17■■□□□ 1.14
RNF4P78317 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.17■■□□□ 1.14
RNF4P78317 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF4P78317 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF4P78317 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RNF4P78317 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.16■■□□□ 1.14
RNF4P78317 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.16■■□□□ 1.14
RNF4P78317 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
RNF4P78317 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
RNF4P78317 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF4P78317 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF4P78317 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
RNF4P78317 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.15■■□□□ 1.14
RNF4P78317 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.15■■□□□ 1.14
RNF4P78317 AC096887.2-201ENST00000623443 1957 ntBASIC22.15■■□□□ 1.14
RNF4P78317 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF4P78317 AC091060.1-201ENST00000623524 1766 ntBASIC22.15■■□□□ 1.14
RNF4P78317 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF4P78317 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.14■■□□□ 1.13
RNF4P78317 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.14■■□□□ 1.13
RNF4P78317 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
RNF4P78317 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
RNF4P78317 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF4P78317 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
RNF4P78317 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF4P78317 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.13■■□□□ 1.13
RNF4P78317 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.13■■□□□ 1.13
RNF4P78317 PVT1_1.1-201ENST00000615125 194 ntBASIC22.13■■□□□ 1.13
RNF4P78317 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
RNF4P78317 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
RNF4P78317 LONRF2P2-201ENST00000439212 571 ntBASIC22.12■■□□□ 1.13
RNF4P78317 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.12■■□□□ 1.13
RNF4P78317 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.12■■□□□ 1.13
RNF4P78317 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF4P78317 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
RNF4P78317 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
RNF4P78317 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.12■■□□□ 1.13
RNF4P78317 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF4P78317 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.11■■□□□ 1.13
RNF4P78317 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF4P78317 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.11■■□□□ 1.13
RNF4P78317 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.11■■□□□ 1.13
RNF4P78317 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC22.11■■□□□ 1.13
RNF4P78317 AC019171.1-201ENST00000601251 1056 ntBASIC22.11■■□□□ 1.13
RNF4P78317 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
RNF4P78317 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
RNF4P78317 DUSP8P4-201ENST00000399538 1761 ntBASIC22.1■■□□□ 1.13
RNF4P78317 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
RNF4P78317 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RNF4P78317 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.1■■□□□ 1.13
RNF4P78317 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
RNF4P78317 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC22.1■■□□□ 1.13
RNF4P78317 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
RNF4P78317 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
RNF4P78317 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.09■■□□□ 1.13
RNF4P78317 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.09■■□□□ 1.13
RNF4P78317 AC145676.1-201ENST00000514988 2004 ntBASIC22.09■■□□□ 1.13
RNF4P78317 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
RNF4P78317 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
RNF4P78317 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
RNF4P78317 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
RNF4P78317 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
RNF4P78317 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.08■■□□□ 1.13
RNF4P78317 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.08■■□□□ 1.13
RNF4P78317 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.08■■□□□ 1.13
RNF4P78317 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
RNF4P78317 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RNF4P78317 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
RNF4P78317 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RNF4P78317 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
RNF4P78317 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RNF4P78317 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF4P78317 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF4P78317 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.06■■□□□ 1.12
RNF4P78317 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF4P78317 AC097639.1-201ENST00000565519 1891 ntBASIC22.05■■□□□ 1.12
RNF4P78317 RARRES2P1-201ENST00000474487 481 ntBASIC22.05■■□□□ 1.12
RNF4P78317 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF4P78317 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF4P78317 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RNF4P78317 KRT8P33-201ENST00000508125 1423 ntBASIC22.05■■□□□ 1.12
RNF4P78317 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF4P78317 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RNF4P78317 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.04■■□□□ 1.12
RNF4P78317 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms