Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RIPK4P57078 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.48■■■□□ 2.63
RIPK4P57078 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
RIPK4P57078 AC074183.2-201ENST00000623112 922 ntBASIC31.48■■■□□ 2.63
RIPK4P57078 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
RIPK4P57078 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
RIPK4P57078 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.48■■■□□ 2.63
RIPK4P57078 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.47■■■□□ 2.63
RIPK4P57078 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC31.47■■■□□ 2.63
RIPK4P57078 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
RIPK4P57078 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.47■■■□□ 2.63
RIPK4P57078 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.47■■■□□ 2.63
RIPK4P57078 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
RIPK4P57078 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.46■■■□□ 2.63
RIPK4P57078 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
RIPK4P57078 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
RIPK4P57078 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC31.45■■■□□ 2.63
RIPK4P57078 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
RIPK4P57078 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
RIPK4P57078 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RIPK4P57078 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.44■■■□□ 2.62
RIPK4P57078 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
RIPK4P57078 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
RIPK4P57078 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RIPK4P57078 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
RIPK4P57078 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RIPK4P57078 LONRF2P2-201ENST00000439212 571 ntBASIC31.43■■■□□ 2.62
RIPK4P57078 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RIPK4P57078 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.42■■■□□ 2.62
RIPK4P57078 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RIPK4P57078 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.42■■■□□ 2.62
RIPK4P57078 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RIPK4P57078 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.41■■■□□ 2.62
RIPK4P57078 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RIPK4P57078 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.41■■■□□ 2.62
RIPK4P57078 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.41■■■□□ 2.62
RIPK4P57078 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
RIPK4P57078 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RIPK4P57078 DUSP8P4-201ENST00000399538 1761 ntBASIC31.4■■■□□ 2.62
RIPK4P57078 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.4■■■□□ 2.62
RIPK4P57078 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
RIPK4P57078 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RIPK4P57078 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.39■■■□□ 2.62
RIPK4P57078 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.39■■■□□ 2.62
RIPK4P57078 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RIPK4P57078 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC31.39■■■□□ 2.62
RIPK4P57078 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RIPK4P57078 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.38■■■□□ 2.61
RIPK4P57078 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.38■■■□□ 2.61
RIPK4P57078 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
RIPK4P57078 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
RIPK4P57078 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.37■■■□□ 2.61
RIPK4P57078 RARRES2P1-201ENST00000474487 481 ntBASIC31.37■■■□□ 2.61
RIPK4P57078 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.37■■■□□ 2.61
RIPK4P57078 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.37■■■□□ 2.61
RIPK4P57078 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
RIPK4P57078 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC31.37■■■□□ 2.61
RIPK4P57078 AC145676.1-201ENST00000514988 2004 ntBASIC31.36■■■□□ 2.61
RIPK4P57078 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
RIPK4P57078 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
RIPK4P57078 AC103834.1-201ENST00000520383 144 ntBASIC31.36■■■□□ 2.61
RIPK4P57078 AC019171.1-201ENST00000601251 1056 ntBASIC31.36■■■□□ 2.61
RIPK4P57078 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
RIPK4P57078 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
RIPK4P57078 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.35■■■□□ 2.61
RIPK4P57078 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RIPK4P57078 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
RIPK4P57078 KRT8P33-201ENST00000508125 1423 ntBASIC31.34■■■□□ 2.61
RIPK4P57078 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
RIPK4P57078 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.34■■■□□ 2.61
RIPK4P57078 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
RIPK4P57078 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
RIPK4P57078 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
RIPK4P57078 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
RIPK4P57078 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.33■■■□□ 2.61
RIPK4P57078 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.33■■■□□ 2.61
RIPK4P57078 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
RIPK4P57078 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RIPK4P57078 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RIPK4P57078 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RIPK4P57078 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
RIPK4P57078 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
RIPK4P57078 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RIPK4P57078 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.3■■■□□ 2.6
RIPK4P57078 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.3■■■□□ 2.6
RIPK4P57078 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RIPK4P57078 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.3■■■□□ 2.6
RIPK4P57078 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC31.3■■■□□ 2.6
RIPK4P57078 AC097639.1-201ENST00000565519 1891 ntBASIC31.29■■■□□ 2.6
RIPK4P57078 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
RIPK4P57078 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.29■■■□□ 2.6
RIPK4P57078 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RIPK4P57078 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RIPK4P57078 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RIPK4P57078 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RIPK4P57078 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RIPK4P57078 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.28■■■□□ 2.6
RIPK4P57078 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC31.28■■■□□ 2.6
RIPK4P57078 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RIPK4P57078 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms