Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC133552.2-201ENST00000619106 1032 ntBASIC23.09■■□□□ 1.29
HNF4AP41235 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HNF4AP41235 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
HNF4AP41235 AC009831.1-201ENST00000580420 1582 ntBASIC23.08■■□□□ 1.29
HNF4AP41235 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HNF4AP41235 AC097639.1-201ENST00000565519 1891 ntBASIC23.08■■□□□ 1.29
HNF4AP41235 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
HNF4AP41235 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
HNF4AP41235 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.07■■□□□ 1.28
HNF4AP41235 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HNF4AP41235 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.07■■□□□ 1.28
HNF4AP41235 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
HNF4AP41235 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
HNF4AP41235 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HNF4AP41235 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
HNF4AP41235 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
HNF4AP41235 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HNF4AP41235 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.06■■□□□ 1.28
HNF4AP41235 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HNF4AP41235 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.05■■□□□ 1.28
HNF4AP41235 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.05■■□□□ 1.28
HNF4AP41235 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HNF4AP41235 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HNF4AP41235 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
HNF4AP41235 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.04■■□□□ 1.28
HNF4AP41235 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
HNF4AP41235 ABHD17AP5-201ENST00000580133 923 ntBASIC23.04■■□□□ 1.28
HNF4AP41235 RAP2CP1-202ENST00000605179 643 ntBASIC23.04■■□□□ 1.28
HNF4AP41235 U85056.1-201ENST00000616429 682 ntBASIC23.04■■□□□ 1.28
HNF4AP41235 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
HNF4AP41235 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HNF4AP41235 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.03■■□□□ 1.28
HNF4AP41235 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HNF4AP41235 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HNF4AP41235 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HNF4AP41235 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
HNF4AP41235 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
HNF4AP41235 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HNF4AP41235 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.03■■□□□ 1.28
HNF4AP41235 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HNF4AP41235 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.03■■□□□ 1.28
HNF4AP41235 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.02■■□□□ 1.28
HNF4AP41235 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HNF4AP41235 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.02■■□□□ 1.28
HNF4AP41235 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.02■■□□□ 1.28
HNF4AP41235 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
HNF4AP41235 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.27
HNF4AP41235 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HNF4AP41235 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HNF4AP41235 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HNF4AP41235 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HNF4AP41235 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HNF4AP41235 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HNF4AP41235 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.01■■□□□ 1.27
HNF4AP41235 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
HNF4AP41235 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.01■■□□□ 1.27
HNF4AP41235 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HNF4AP41235 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HNF4AP41235 AL592293.1-201ENST00000502889 1188 ntBASIC23■■□□□ 1.27
HNF4AP41235 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
HNF4AP41235 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23■■□□□ 1.27
HNF4AP41235 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23■■□□□ 1.27
HNF4AP41235 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HNF4AP41235 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HNF4AP41235 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.99■■□□□ 1.27
HNF4AP41235 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HNF4AP41235 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
HNF4AP41235 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.99■■□□□ 1.27
HNF4AP41235 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HNF4AP41235 AC142381.3-201ENST00000568208 1670 ntBASIC22.99■■□□□ 1.27
HNF4AP41235 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.99■■□□□ 1.27
HNF4AP41235 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HNF4AP41235 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HNF4AP41235 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.98■■□□□ 1.27
HNF4AP41235 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.98■■□□□ 1.27
HNF4AP41235 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
HNF4AP41235 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HNF4AP41235 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 AC022211.4-201ENST00000625094 2161 ntBASIC22.96■■□□□ 1.27
HNF4AP41235 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 KRT18P10-201ENST00000388836 1287 ntBASIC22.96■■□□□ 1.27
HNF4AP41235 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
HNF4AP41235 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
HNF4AP41235 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.95■■□□□ 1.26
HNF4AP41235 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
HNF4AP41235 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.95■■□□□ 1.26
HNF4AP41235 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
HNF4AP41235 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
HNF4AP41235 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms