Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
UPK3AO75631 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
UPK3AO75631 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3AO75631 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3AO75631 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3AO75631 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3AO75631 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
UPK3AO75631 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3AO75631 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3AO75631 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.37■■□□□ 1.01
UPK3AO75631 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.37■■□□□ 1.01
UPK3AO75631 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
UPK3AO75631 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3AO75631 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3AO75631 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3AO75631 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
UPK3AO75631 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.36■■□□□ 1.01
UPK3AO75631 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
UPK3AO75631 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3AO75631 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.36■■□□□ 1.01
UPK3AO75631 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3AO75631 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3AO75631 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
UPK3AO75631 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3AO75631 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3AO75631 AL592293.1-201ENST00000502889 1188 ntBASIC21.35■■□□□ 1.01
UPK3AO75631 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
UPK3AO75631 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
UPK3AO75631 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.34■■□□□ 1.01
UPK3AO75631 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
UPK3AO75631 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3AO75631 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3AO75631 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3AO75631 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3AO75631 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.34■■□□□ 1.01
UPK3AO75631 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3AO75631 AC142381.3-201ENST00000568208 1670 ntBASIC21.34■■□□□ 1.01
UPK3AO75631 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
UPK3AO75631 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
UPK3AO75631 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
UPK3AO75631 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.33■■□□□ 1.01
UPK3AO75631 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
UPK3AO75631 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
UPK3AO75631 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK3AO75631 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
UPK3AO75631 NTF6A-201ENST00000591175 560 ntBASIC21.32■■□□□ 1
UPK3AO75631 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.32■■□□□ 1
UPK3AO75631 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.32■■□□□ 1
UPK3AO75631 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
UPK3AO75631 AC096887.2-201ENST00000623443 1957 ntBASIC21.32■■□□□ 1
UPK3AO75631 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPK3AO75631 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK3AO75631 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK3AO75631 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
UPK3AO75631 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.31■■□□□ 1
UPK3AO75631 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
UPK3AO75631 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
UPK3AO75631 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
UPK3AO75631 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.31■■□□□ 1
UPK3AO75631 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.31■■□□□ 1
UPK3AO75631 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.3■■□□□ 1
UPK3AO75631 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
UPK3AO75631 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
UPK3AO75631 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK3AO75631 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.29■■□□□ 1
UPK3AO75631 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.29■■□□□ 1
UPK3AO75631 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
UPK3AO75631 KRT18P60-201ENST00000312876 1297 ntBASIC21.29■■□□□ 1
UPK3AO75631 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.29■■□□□ 1
UPK3AO75631 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
UPK3AO75631 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.29■■□□□ 1
UPK3AO75631 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.28■■□□□ 1
UPK3AO75631 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK3AO75631 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK3AO75631 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.28■■□□□ 1
UPK3AO75631 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC21.28■■□□□ 1
UPK3AO75631 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.28■■□□□ 1
UPK3AO75631 AC022211.4-201ENST00000625094 2161 ntBASIC21.28■■□□□ 1
UPK3AO75631 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
UPK3AO75631 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
UPK3AO75631 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK3AO75631 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.27■■□□□ 1
UPK3AO75631 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPK3AO75631 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
UPK3AO75631 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPK3AO75631 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.27■■□□□ 1
UPK3AO75631 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPK3AO75631 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPK3AO75631 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPK3AO75631 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPK3AO75631 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
UPK3AO75631 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
UPK3AO75631 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.26■□□□□ 0.99
UPK3AO75631 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPK3AO75631 SPCS2P3-201ENST00000500401 656 ntBASIC21.26■□□□□ 0.99
UPK3AO75631 AC138932.3-201ENST00000567634 1902 ntBASIC21.25■□□□□ 0.99
UPK3AO75631 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UPK3AO75631 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPK3AO75631 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UPK3AO75631 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms