Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC3O43542 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC3O43542 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
XRCC3O43542 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
XRCC3O43542 SLC6A10P-202ENST00000431994 2058 ntBASIC20.41■□□□□ 0.86
XRCC3O43542 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
XRCC3O43542 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
XRCC3O43542 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.41■□□□□ 0.86
XRCC3O43542 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.4■□□□□ 0.86
XRCC3O43542 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.4■□□□□ 0.86
XRCC3O43542 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
XRCC3O43542 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
XRCC3O43542 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
XRCC3O43542 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
XRCC3O43542 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
XRCC3O43542 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
XRCC3O43542 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
XRCC3O43542 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC20.39■□□□□ 0.85
XRCC3O43542 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
XRCC3O43542 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.39■□□□□ 0.85
XRCC3O43542 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
XRCC3O43542 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.39■□□□□ 0.85
XRCC3O43542 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
XRCC3O43542 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
XRCC3O43542 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
XRCC3O43542 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.38■□□□□ 0.85
XRCC3O43542 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.38■□□□□ 0.85
XRCC3O43542 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
XRCC3O43542 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
XRCC3O43542 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
XRCC3O43542 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
XRCC3O43542 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
XRCC3O43542 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
XRCC3O43542 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
XRCC3O43542 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
XRCC3O43542 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
XRCC3O43542 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
XRCC3O43542 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
XRCC3O43542 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.36■□□□□ 0.85
XRCC3O43542 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.36■□□□□ 0.85
XRCC3O43542 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
XRCC3O43542 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
XRCC3O43542 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
XRCC3O43542 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
XRCC3O43542 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 AC087741.3-201ENST00000624270 1347 ntBASIC20.35■□□□□ 0.85
XRCC3O43542 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.35■□□□□ 0.85
XRCC3O43542 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.35■□□□□ 0.85
XRCC3O43542 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 AP006261.1-201ENST00000584783 668 ntBASIC20.35■□□□□ 0.85
XRCC3O43542 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.35■□□□□ 0.85
XRCC3O43542 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
XRCC3O43542 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.35■□□□□ 0.85
XRCC3O43542 DUSP8P5-201ENST00000422884 1815 ntBASIC20.34■□□□□ 0.85
XRCC3O43542 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
XRCC3O43542 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
XRCC3O43542 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
XRCC3O43542 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
XRCC3O43542 AC079834.2-201ENST00000609776 1949 ntBASIC20.34■□□□□ 0.85
XRCC3O43542 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
XRCC3O43542 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
XRCC3O43542 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
XRCC3O43542 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
XRCC3O43542 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
XRCC3O43542 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
XRCC3O43542 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
XRCC3O43542 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
XRCC3O43542 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.33■□□□□ 0.85
XRCC3O43542 AL359504.2-201ENST00000605506 1601 ntBASIC20.33■□□□□ 0.84
XRCC3O43542 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
XRCC3O43542 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
XRCC3O43542 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC3O43542 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.32■□□□□ 0.84
XRCC3O43542 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC3O43542 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
XRCC3O43542 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC3O43542 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
XRCC3O43542 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
XRCC3O43542 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC3O43542 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.3■□□□□ 0.84
XRCC3O43542 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.3■□□□□ 0.84
XRCC3O43542 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.3■□□□□ 0.84
XRCC3O43542 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC3O43542 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC3O43542 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
XRCC3O43542 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.29■□□□□ 0.84
XRCC3O43542 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC3O43542 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
XRCC3O43542 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms