Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 DUX4L18-201ENST00000553347 1267 ntBASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC020928.2-201ENST00000588717 2197 ntBASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC018755.3-202ENST00000596210 929 ntBASIC26.54■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC004987.1-201ENST00000428627 508 ntBASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC097639.1-201ENST00000565519 1891 ntBASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MIR6765-201ENST00000614092 87 ntBASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ATP5G2P3-201ENST00000429083 425 ntBASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AL033527.3-201ENST00000566366 1196 ntBASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 RPS2P7-201ENST00000447334 885 ntBASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 AC012354.3-201ENST00000623734 483 ntBASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms