Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 HCG4P8-203ENST00000443049 980 ntBASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 AL353732.1-201ENST00000569618 1459 ntBASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
PCDHA3Q9Y5H8 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 AC006449.6-201ENST00000612330 2296 ntBASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 GPAA1P2-202ENST00000606848 1787 ntBASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 LAGE3P1-201ENST00000425356 484 ntBASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 AC006557.2-201ENST00000592985 1240 ntBASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 AC107918.4-202ENST00000641623 219 ntBASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.46■□□□□ 0.39
PCDHA3Q9Y5H8 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCDHA3Q9Y5H8 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 LINC01144-201ENST00000626198 1710 ntBASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AF238378.1-201ENST00000526806 358 ntBASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 PCGF3-213ENST00000620529 1899 ntBASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AL603832.2-201ENST00000566195 2125 ntBASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCDHA3Q9Y5H8 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms