Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SIX2Q9NPC8 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.88■□□□□ 0.45
SIX2Q9NPC8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 AL513480.1-201ENST00000451731 511 ntBASIC17.88■□□□□ 0.45
SIX2Q9NPC8 POU5F1P6-201ENST00000466990 990 ntBASIC17.88■□□□□ 0.45
SIX2Q9NPC8 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.88■□□□□ 0.45
SIX2Q9NPC8 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX2Q9NPC8 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 AC007950.2-201ENST00000615045 2347 ntBASIC17.87■□□□□ 0.45
SIX2Q9NPC8 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 RHOQP3-201ENST00000437982 621 ntBASIC17.87■□□□□ 0.45
SIX2Q9NPC8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 AL662844.1-201ENST00000546340 181 ntBASIC17.87■□□□□ 0.45
SIX2Q9NPC8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 AL031055.1-201ENST00000606362 631 ntBASIC17.87■□□□□ 0.45
SIX2Q9NPC8 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 AL365203.3-201ENST00000609742 2057 ntBASIC17.87■□□□□ 0.45
SIX2Q9NPC8 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 AC022188.1-201ENST00000620960 1664 ntBASIC17.87■□□□□ 0.45
SIX2Q9NPC8 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX2Q9NPC8 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 CRYGEP-201ENST00000412192 528 ntBASIC17.86■□□□□ 0.45
SIX2Q9NPC8 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AL031432.2-201ENST00000566714 459 ntBASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AL928711.1-201ENST00000570165 459 ntBASIC17.86■□□□□ 0.45
SIX2Q9NPC8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AC020765.3-201ENST00000613051 740 ntBASIC17.86■□□□□ 0.45
SIX2Q9NPC8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms