Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
SHANK3Q9BYB0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 SDHAP3-202ENST00000515467 728 ntBASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 FAM8A2P-201ENST00000528813 1142 ntBASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 MIR5189-201ENST00000577370 114 ntBASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SHANK3Q9BYB0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 MFF-223ENST00000524634 647 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 PAM16-204ENST00000571941 674 ntTSL 3 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 MIR4321-201ENST00000592276 80 ntBASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 TMEM261P1-201ENST00000604899 340 ntBASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 AC018665.1-201ENST00000622927 1362 ntBASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SHANK3Q9BYB0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 REXO1L6P-201ENST00000603433 1515 ntBASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AC092552.1-201ENST00000547243 906 ntBASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 MIR8072-201ENST00000614241 80 ntBASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 Z97205.2-201ENST00000564697 1639 ntBASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AC015936.2-201ENST00000593177 259 ntBASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC21.21■□□□□ 0.99
SHANK3Q9BYB0 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SHANK3Q9BYB0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
SHANK3Q9BYB0 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms