Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 FAM58DP-201ENST00000428076 619 ntBASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 GPS2P2-201ENST00000430745 888 ntBASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 AC124947.2-201ENST00000547118 1133 ntBASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TRAIPQ9BWF2 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 AC067863.1-201ENST00000494933 530 ntBASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 MIR3197-201ENST00000582241 73 ntBASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRAIPQ9BWF2 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 KC6-207ENST00000600644 2311 ntTSL 3 BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
TRAIPQ9BWF2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 KRT18P32-201ENST00000424695 1287 ntBASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms