Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AC023141.13-201ENST00000604991 943 ntBASIC12.92□□□□□ -0.34
CCDC140Q96MF4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ME2P1-201ENST00000426028 1970 ntBASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AL662844.4-201ENST00000606367 2838 ntBASIC12.92□□□□□ -0.34
CCDC140Q96MF4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 MED15P5-201ENST00000423150 992 ntBASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AC140113.2-201ENST00000604370 208 ntBASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AL031055.1-201ENST00000606362 631 ntBASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AC004877.2-201ENST00000623941 599 ntBASIC12.91□□□□□ -0.34
CCDC140Q96MF4 AC007064.4-201ENST00000637740 555 ntBASIC12.91□□□□□ -0.34
CCDC140Q96MF4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.91□□□□□ -0.34
CCDC140Q96MF4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CCDC140Q96MF4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms