Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 COPS8-203ENST00000409334 794 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 BX005266.1-201ENST00000473402 457 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 AC064862.7-201ENST00000604520 867 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 AL139424.1-201ENST00000607572 797 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 AC092119.3-201ENST00000612618 583 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 AF228730.7-201ENST00000641842 219 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 AL662844.4-201ENST00000606367 2838 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 AC002310.6-201ENST00000624451 1377 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC12.56□□□□□ -0.4
LINC00477Q96M19 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 AC022188.1-201ENST00000620960 1664 ntBASIC12.55□□□□□ -0.4
LINC00477Q96M19 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 MSRA-206ENST00000521209 814 ntTSL 3 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 AC139887.3-201ENST00000568585 713 ntBASIC12.55□□□□□ -0.4
LINC00477Q96M19 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 NKAPP1-205ENST00000585790 367 ntBASIC12.55□□□□□ -0.4
LINC00477Q96M19 AP001269.4-201ENST00000609611 512 ntBASIC12.55□□□□□ -0.4
LINC00477Q96M19 AL358472.4-201ENST00000633140 710 ntBASIC12.55□□□□□ -0.4
LINC00477Q96M19 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LINC00477Q96M19 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
LINC00477Q96M19 AC126755.1-201ENST00000525846 6405 ntBASIC12.55□□□□□ -0.4
LINC00477Q96M19 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms