Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CPNE4Q96A23 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
CPNE4Q96A23 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
CPNE4Q96A23 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.02■□□□□ -0
CPNE4Q96A23 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.02■□□□□ -0
CPNE4Q96A23 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.02■□□□□ -0
CPNE4Q96A23 AC140658.5-201ENST00000438532 169 ntBASIC15.02■□□□□ -0
CPNE4Q96A23 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.02■□□□□ -0
CPNE4Q96A23 AC112191.1-201ENST00000523689 701 ntBASIC15.02■□□□□ -0
CPNE4Q96A23 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.02■□□□□ -0
CPNE4Q96A23 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.02■□□□□ -0
CPNE4Q96A23 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CPNE4Q96A23 C20orf181-201ENST00000623918 480 ntBASIC15.02■□□□□ -0
CPNE4Q96A23 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CPNE4Q96A23 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CPNE4Q96A23 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 AC002056.1-201ENST00000395613 760 ntBASIC15.01□□□□□ -0.01
CPNE4Q96A23 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 MKNK2P1-201ENST00000437526 628 ntBASIC15.01□□□□□ -0.01
CPNE4Q96A23 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.01□□□□□ -0.01
CPNE4Q96A23 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 AL139011.1-202ENST00000642063 584 ntBASIC15.01□□□□□ -0.01
CPNE4Q96A23 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 AL391256.1-201ENST00000443260 1855 ntBASIC15.01□□□□□ -0.01
CPNE4Q96A23 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.01□□□□□ -0.01
CPNE4Q96A23 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CPNE4Q96A23 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CPNE4Q96A23 RNU1-129P-201ENST00000384064 167 ntBASIC15□□□□□ -0.01
CPNE4Q96A23 COA5-202ENST00000409997 557 ntTSL 4 BASIC15□□□□□ -0.01
CPNE4Q96A23 PMS2P4-201ENST00000412466 1052 ntBASIC15□□□□□ -0.01
CPNE4Q96A23 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms