Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 AL118558.3-201ENST00000607414 1079 ntBASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
SMC1BQ8NDV3 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 LDHBP1-201ENST00000455730 1119 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 MIR4722-201ENST00000578292 60 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 MIR4492-201ENST00000581627 80 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 U62317.3-201ENST00000608319 855 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 AC091271.1-201ENST00000611877 1162 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 NOC2LP1-202ENST00000452600 2235 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 AC093503.3-201ENST00000624917 2352 ntBASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SMC1BQ8NDV3 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SMC1BQ8NDV3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SMC1BQ8NDV3 KRT8P12-202ENST00000472924 1397 ntBASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms