Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AC026120.1-201ENST00000611536 926 ntBASIC15.53■□□□□ 0.08
BEST3Q8N1M1 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 FRMD8P1-201ENST00000440433 1524 ntBASIC15.53■□□□□ 0.08
BEST3Q8N1M1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SLC22A20-204ENST00000530038 1673 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 HCG4-201ENST00000418983 998 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SPDYE11-202ENST00000450699 704 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 FAM86C2P-203ENST00000528684 1004 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SPDYE9P-201ENST00000570642 692 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AC091167.2-201ENST00000579581 588 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SPDYE10P-202ENST00000612005 668 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 SPDYE8P-202ENST00000612377 668 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AC093028.1-201ENST00000622998 982 ntBASIC15.52■□□□□ 0.08
BEST3Q8N1M1 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.52■□□□□ 0.08
BEST3Q8N1M1 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 NKILA-202ENST00000614771 2598 ntBASIC15.52■□□□□ 0.07
BEST3Q8N1M1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.52■□□□□ 0.07
BEST3Q8N1M1 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 AL645939.2-201ENST00000427340 991 ntBASIC15.51■□□□□ 0.07
BEST3Q8N1M1 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 HMGN1P19-201ENST00000436976 333 ntBASIC15.51■□□□□ 0.07
BEST3Q8N1M1 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 KRT8P48-201ENST00000515599 1220 ntBASIC15.51■□□□□ 0.07
BEST3Q8N1M1 RFPL4AP1-201ENST00000530883 850 ntBASIC15.51■□□□□ 0.07
BEST3Q8N1M1 DUX4L17-201ENST00000557360 1267 ntBASIC15.51■□□□□ 0.07
BEST3Q8N1M1 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
BEST3Q8N1M1 AC011676.5-201ENST00000624864 2660 ntBASIC15.51■□□□□ 0.07
BEST3Q8N1M1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
BEST3Q8N1M1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
BEST3Q8N1M1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
BEST3Q8N1M1 AL021920.2-201ENST00000624828 1351 ntBASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms