Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 RNF216P1-203ENST00000404404 2427 ntBASIC14.84□□□□□ -0.03
SKA3Q8IX90 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SKA3Q8IX90 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.84□□□□□ -0.03
SKA3Q8IX90 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.83□□□□□ -0.03
SKA3Q8IX90 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
SKA3Q8IX90 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SKA3Q8IX90 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.03
SKA3Q8IX90 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
SKA3Q8IX90 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.03
SKA3Q8IX90 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.83□□□□□ -0.03
SKA3Q8IX90 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 PRSS29P-201ENST00000440800 595 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC107918.2-201ENST00000530817 355 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC145285.3-201ENST00000564603 959 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 TCAP-202ENST00000578283 583 ntTSL 5 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC120114.3-201ENST00000611923 658 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC010654.1-201ENST00000615722 808 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC129492.6-201ENST00000611383 1305 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AL645728.1-201ENST00000366221 2101 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SKA3Q8IX90 AC104109.2-201ENST00000602919 1418 ntBASIC14.83□□□□□ -0.04
SKA3Q8IX90 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
SKA3Q8IX90 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 CRYGEP-201ENST00000412192 528 ntBASIC14.82□□□□□ -0.04
SKA3Q8IX90 VN2R19P-201ENST00000442399 1052 ntBASIC14.82□□□□□ -0.04
SKA3Q8IX90 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.82□□□□□ -0.04
SKA3Q8IX90 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SKA3Q8IX90 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms