Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.7■□□□□ 0.26
LDB1Q86U70 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LDB1Q86U70 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LDB1Q86U70 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.7■□□□□ 0.26
LDB1Q86U70 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
LDB1Q86U70 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LDB1Q86U70 AC129492.6-201ENST00000611383 1305 ntBASIC16.7■□□□□ 0.26
LDB1Q86U70 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 AL353732.1-201ENST00000569618 1459 ntBASIC16.69■□□□□ 0.26
LDB1Q86U70 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 AC093909.1-201ENST00000504731 1122 ntBASIC16.69■□□□□ 0.26
LDB1Q86U70 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 IGHV3-22-201ENST00000520721 359 ntBASIC16.69■□□□□ 0.26
LDB1Q86U70 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 AL662844.1-201ENST00000546340 181 ntBASIC16.69■□□□□ 0.26
LDB1Q86U70 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.69■□□□□ 0.26
LDB1Q86U70 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.69■□□□□ 0.26
LDB1Q86U70 AC091167.2-201ENST00000579581 588 ntBASIC16.69■□□□□ 0.26
LDB1Q86U70 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB1Q86U70 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB1Q86U70 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB1Q86U70 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 DOC2GP-204ENST00000639052 2548 ntBASIC16.68■□□□□ 0.26
LDB1Q86U70 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.68■□□□□ 0.26
LDB1Q86U70 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDB1Q86U70 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.68■□□□□ 0.26
LDB1Q86U70 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 HLA-J-202ENST00000469281 1241 ntBASIC16.68■□□□□ 0.26
LDB1Q86U70 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.68■□□□□ 0.26
LDB1Q86U70 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.68■□□□□ 0.26
LDB1Q86U70 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 ACTL9-202ENST00000612068 1252 ntBASIC16.68■□□□□ 0.26
LDB1Q86U70 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
LDB1Q86U70 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 AL031731.1-201ENST00000642131 2094 ntBASIC16.68■□□□□ 0.26
LDB1Q86U70 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LDB1Q86U70 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB1Q86U70 LINC02199-201ENST00000506655 2702 ntBASIC16.68■□□□□ 0.26
LDB1Q86U70 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB1Q86U70 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB1Q86U70 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LDB1Q86U70 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.67■□□□□ 0.26
LDB1Q86U70 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms