Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 LINC02447-202ENST00000501888 2146 ntBASIC10.4□□□□□ -0.74
LINC00643Q86TS7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AL109659.2-201ENST00000606809 1674 ntBASIC10.4□□□□□ -0.74
LINC00643Q86TS7 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
LINC00643Q86TS7 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC10.4□□□□□ -0.75
LINC00643Q86TS7 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AL163051.1-201ENST00000569214 1512 ntBASIC10.39□□□□□ -0.75
LINC00643Q86TS7 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC099343.3-201ENST00000605834 2503 ntBASIC10.39□□□□□ -0.75
LINC00643Q86TS7 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 MIR4787-201ENST00000607364 84 ntBASIC10.39□□□□□ -0.75
LINC00643Q86TS7 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC136759.1-202ENST00000530858 2194 ntBASIC10.39□□□□□ -0.75
LINC00643Q86TS7 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 AC005562.1-201ENST00000583030 3219 ntBASIC10.39□□□□□ -0.75
LINC00643Q86TS7 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
LINC00643Q86TS7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
LINC00643Q86TS7 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms