Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC067930.6-201ENST00000623257 4947 ntBASIC15.62■□□□□ 0.09
RFX4Q33E94 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFX4Q33E94 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
RFX4Q33E94 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.62■□□□□ 0.09
RFX4Q33E94 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.62■□□□□ 0.09
RFX4Q33E94 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
RFX4Q33E94 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.61■□□□□ 0.09
RFX4Q33E94 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
RFX4Q33E94 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.61■□□□□ 0.09
RFX4Q33E94 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
RFX4Q33E94 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.61■□□□□ 0.09
RFX4Q33E94 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.61■□□□□ 0.09
RFX4Q33E94 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.61■□□□□ 0.09
RFX4Q33E94 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 AC246785.2-201ENST00000432512 513 ntBASIC15.61■□□□□ 0.09
RFX4Q33E94 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 STK19B-204ENST00000512515 211 ntBASIC15.61■□□□□ 0.09
RFX4Q33E94 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.61■□□□□ 0.09
RFX4Q33E94 AC009533.2-201ENST00000543664 586 ntBASIC15.61■□□□□ 0.09
RFX4Q33E94 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 AL136038.3-201ENST00000561909 1096 ntBASIC15.61■□□□□ 0.09
RFX4Q33E94 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
RFX4Q33E94 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
RFX4Q33E94 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
RFX4Q33E94 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.61■□□□□ 0.09
RFX4Q33E94 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.6■□□□□ 0.09
RFX4Q33E94 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
RFX4Q33E94 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.6■□□□□ 0.09
RFX4Q33E94 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.6■□□□□ 0.09
RFX4Q33E94 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
RFX4Q33E94 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
RFX4Q33E94 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
RFX4Q33E94 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC15.6■□□□□ 0.09
RFX4Q33E94 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.6■□□□□ 0.09
RFX4Q33E94 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.6■□□□□ 0.09
RFX4Q33E94 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
RFX4Q33E94 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.6■□□□□ 0.09
RFX4Q33E94 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
RFX4Q33E94 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.6■□□□□ 0.09
RFX4Q33E94 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.6■□□□□ 0.09
RFX4Q33E94 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.6■□□□□ 0.09
RFX4Q33E94 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.6■□□□□ 0.09
RFX4Q33E94 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.6■□□□□ 0.09
RFX4Q33E94 AC023824.1-201ENST00000562945 2975 ntBASIC15.6■□□□□ 0.09
RFX4Q33E94 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
RFX4Q33E94 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
RFX4Q33E94 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
RFX4Q33E94 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
RFX4Q33E94 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
RFX4Q33E94 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms