Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
PKNOX1P55347 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PKNOX1P55347 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
PKNOX1P55347 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
PKNOX1P55347 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.45■□□□□ 0.22
PKNOX1P55347 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 AC132008.2-207ENST00000454517 770 ntBASIC16.45■□□□□ 0.22
PKNOX1P55347 AC106795.1-205ENST00000512851 1056 ntBASIC16.45■□□□□ 0.22
PKNOX1P55347 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
PKNOX1P55347 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.45■□□□□ 0.22
PKNOX1P55347 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.45■□□□□ 0.22
PKNOX1P55347 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.45■□□□□ 0.22
PKNOX1P55347 AL022326.1-202ENST00000641533 845 ntBASIC16.45■□□□□ 0.22
PKNOX1P55347 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.45■□□□□ 0.22
PKNOX1P55347 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.45■□□□□ 0.22
PKNOX1P55347 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.45■□□□□ 0.22
PKNOX1P55347 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PKNOX1P55347 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 RBM17P3-201ENST00000417687 1192 ntBASIC16.44■□□□□ 0.22
PKNOX1P55347 BX005266.1-201ENST00000473402 457 ntBASIC16.44■□□□□ 0.22
PKNOX1P55347 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.44■□□□□ 0.22
PKNOX1P55347 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.44■□□□□ 0.22
PKNOX1P55347 AC138894.3-201ENST00000603787 634 ntBASIC16.44■□□□□ 0.22
PKNOX1P55347 AL139288.1-201ENST00000623748 933 ntBASIC16.44■□□□□ 0.22
PKNOX1P55347 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.44■□□□□ 0.22
PKNOX1P55347 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
PKNOX1P55347 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PKNOX1P55347 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.43■□□□□ 0.22
PKNOX1P55347 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PKNOX1P55347 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.43■□□□□ 0.22
PKNOX1P55347 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PKNOX1P55347 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.43■□□□□ 0.22
PKNOX1P55347 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PKNOX1P55347 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms