Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.86■□□□□ 0.13
LIM2P55344 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.86■□□□□ 0.13
LIM2P55344 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
LIM2P55344 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 SNX33P1-201ENST00000592116 1762 ntBASIC15.86■□□□□ 0.13
LIM2P55344 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
LIM2P55344 HMGA1P7-201ENST00000406908 502 ntBASIC15.86■□□□□ 0.13
LIM2P55344 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.86■□□□□ 0.13
LIM2P55344 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.86■□□□□ 0.13
LIM2P55344 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.86■□□□□ 0.13
LIM2P55344 POLD2P1-201ENST00000511220 997 ntBASIC15.86■□□□□ 0.13
LIM2P55344 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
LIM2P55344 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 AL031432.2-201ENST00000566714 459 ntBASIC15.86■□□□□ 0.13
LIM2P55344 AL928711.1-201ENST00000570165 459 ntBASIC15.86■□□□□ 0.13
LIM2P55344 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.86■□□□□ 0.13
LIM2P55344 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 AC006449.5-201ENST00000610658 2098 ntBASIC15.86■□□□□ 0.13
LIM2P55344 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
LIM2P55344 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.86■□□□□ 0.13
LIM2P55344 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
LIM2P55344 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIM2P55344 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 AC025580.3-201ENST00000617932 1424 ntBASIC15.85■□□□□ 0.13
LIM2P55344 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LIM2P55344 AL671710.1-201ENST00000610245 2349 ntBASIC15.85■□□□□ 0.13
LIM2P55344 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LIM2P55344 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.85■□□□□ 0.13
LIM2P55344 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 KRT19P2-202ENST00000557173 1012 ntBASIC15.85■□□□□ 0.13
LIM2P55344 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.85■□□□□ 0.13
LIM2P55344 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.85■□□□□ 0.13
LIM2P55344 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.85■□□□□ 0.13
LIM2P55344 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.85■□□□□ 0.13
LIM2P55344 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 AL662844.4-201ENST00000606367 2838 ntBASIC15.85■□□□□ 0.13
LIM2P55344 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.85■□□□□ 0.13
LIM2P55344 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIM2P55344 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 OR6D1P-203ENST00000641209 4860 ntBASIC15.84■□□□□ 0.13
LIM2P55344 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.84■□□□□ 0.13
LIM2P55344 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.84■□□□□ 0.13
LIM2P55344 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LIM2P55344 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
LIM2P55344 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.84■□□□□ 0.13
LIM2P55344 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.84■□□□□ 0.13
LIM2P55344 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.84■□□□□ 0.13
LIM2P55344 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIM2P55344 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms