Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LIG3P49916 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.66■□□□□ 0.42
LIG3P49916 FAM197Y8-203ENST00000450145 560 ntBASIC17.66■□□□□ 0.42
LIG3P49916 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIG3P49916 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
LIG3P49916 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.66■□□□□ 0.42
LIG3P49916 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.66■□□□□ 0.42
LIG3P49916 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.66■□□□□ 0.42
LIG3P49916 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
LIG3P49916 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LIG3P49916 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LIG3P49916 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.65■□□□□ 0.42
LIG3P49916 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 MRPL3P1-201ENST00000400109 1033 ntBASIC17.65■□□□□ 0.42
LIG3P49916 AC103564.2-201ENST00000432853 1299 ntBASIC17.65■□□□□ 0.42
LIG3P49916 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.65■□□□□ 0.42
LIG3P49916 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
LIG3P49916 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.65■□□□□ 0.42
LIG3P49916 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.65■□□□□ 0.42
LIG3P49916 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 AP000867.4-201ENST00000641616 219 ntBASIC17.65■□□□□ 0.42
LIG3P49916 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 AP002414.2-201ENST00000591780 3365 ntBASIC17.65■□□□□ 0.42
LIG3P49916 BX276092.7-203ENST00000637198 1536 ntBASIC17.65■□□□□ 0.42
LIG3P49916 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIG3P49916 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.65■□□□□ 0.42
LIG3P49916 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.65■□□□□ 0.42
LIG3P49916 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
LIG3P49916 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
LIG3P49916 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.64■□□□□ 0.41
LIG3P49916 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC17.64■□□□□ 0.41
LIG3P49916 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
LIG3P49916 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
LIG3P49916 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.64■□□□□ 0.41
LIG3P49916 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.64■□□□□ 0.41
LIG3P49916 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
LIG3P49916 SCARNA2-201ENST00000458748 420 ntBASIC17.64■□□□□ 0.41
LIG3P49916 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms