Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.74□□□□□ -0.21
CDX1P47902 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.73□□□□□ -0.21
CDX1P47902 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.73□□□□□ -0.21
CDX1P47902 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.73□□□□□ -0.21
CDX1P47902 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.73□□□□□ -0.21
CDX1P47902 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CDX1P47902 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
CDX1P47902 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.73□□□□□ -0.21
CDX1P47902 FAM197Y8-203ENST00000450145 560 ntBASIC13.73□□□□□ -0.21
CDX1P47902 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.73□□□□□ -0.21
CDX1P47902 AP001269.4-201ENST00000609611 512 ntBASIC13.73□□□□□ -0.21
CDX1P47902 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CDX1P47902 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.73□□□□□ -0.21
CDX1P47902 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
CDX1P47902 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 AC010460.3-201ENST00000511359 1579 ntBASIC13.73□□□□□ -0.21
CDX1P47902 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC13.73□□□□□ -0.21
CDX1P47902 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.73□□□□□ -0.21
CDX1P47902 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.73□□□□□ -0.21
CDX1P47902 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.73□□□□□ -0.21
CDX1P47902 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
CDX1P47902 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDX1P47902 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CDX1P47902 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
CDX1P47902 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.72□□□□□ -0.21
CDX1P47902 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CDX1P47902 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC13.72□□□□□ -0.21
CDX1P47902 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 DDX43P3-201ENST00000441064 443 ntBASIC13.72□□□□□ -0.21
CDX1P47902 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 FGFR3P6-201ENST00000457012 610 ntBASIC13.72□□□□□ -0.21
CDX1P47902 AC009078.2-202ENST00000463353 338 ntBASIC13.72□□□□□ -0.21
CDX1P47902 AF186996.4-201ENST00000467186 377 ntBASIC13.72□□□□□ -0.21
CDX1P47902 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.72□□□□□ -0.21
CDX1P47902 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.72□□□□□ -0.21
CDX1P47902 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.72□□□□□ -0.21
CDX1P47902 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.72□□□□□ -0.21
CDX1P47902 AL009178.2-201ENST00000597278 2719 ntBASIC13.72□□□□□ -0.21
CDX1P47902 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
CDX1P47902 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.72□□□□□ -0.21
CDX1P47902 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms