Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
HTTP42858 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.46■□□□□ 0.55
HTTP42858 AC092978.1-202ENST00000637590 1327 ntBASIC18.46■□□□□ 0.55
HTTP42858 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HTTP42858 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.46■□□□□ 0.55
HTTP42858 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.45■□□□□ 0.54
HTTP42858 RPS2P36-201ENST00000456516 831 ntBASIC18.45■□□□□ 0.54
HTTP42858 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
HTTP42858 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC18.45■□□□□ 0.54
HTTP42858 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC18.45■□□□□ 0.54
HTTP42858 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 GNRHR2-203ENST00000581100 1187 ntBASIC18.45■□□□□ 0.54
HTTP42858 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HTTP42858 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 AL589702.1-201ENST00000641229 1509 ntBASIC18.45■□□□□ 0.54
HTTP42858 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 KRT8P49-201ENST00000604166 1432 ntBASIC18.45■□□□□ 0.54
HTTP42858 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.45■□□□□ 0.54
HTTP42858 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.45■□□□□ 0.54
HTTP42858 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HTTP42858 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.44■□□□□ 0.54
HTTP42858 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.44■□□□□ 0.54
HTTP42858 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
HTTP42858 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 OLR1-203ENST00000432556 950 ntTSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 RN7SL560P-201ENST00000577943 264 ntBASIC18.44■□□□□ 0.54
HTTP42858 AC005695.3-201ENST00000614522 232 ntBASIC18.44■□□□□ 0.54
HTTP42858 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.44■□□□□ 0.54
HTTP42858 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.44■□□□□ 0.54
HTTP42858 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.44■□□□□ 0.54
HTTP42858 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
HTTP42858 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.44■□□□□ 0.54
HTTP42858 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC18.44■□□□□ 0.54
HTTP42858 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.44■□□□□ 0.54
HTTP42858 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
HTTP42858 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HTTP42858 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.44■□□□□ 0.54
HTTP42858 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
HTTP42858 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HTTP42858 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
HTTP42858 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.43■□□□□ 0.54
HTTP42858 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HTTP42858 AL022328.1-201ENST00000610050 478 ntBASIC18.43■□□□□ 0.54
HTTP42858 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.43■□□□□ 0.54
HTTP42858 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.43■□□□□ 0.54
HTTP42858 TNXA-203ENST00000507684 2038 ntBASIC18.43■□□□□ 0.54
HTTP42858 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.43■□□□□ 0.54
HTTP42858 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.43■□□□□ 0.54
HTTP42858 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HTTP42858 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms