Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CIITAP33076 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.77■□□□□ 0.6
CIITAP33076 AL138918.1-201ENST00000568306 659 ntBASIC18.77■□□□□ 0.6
CIITAP33076 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.77■□□□□ 0.6
CIITAP33076 AC027612.4-201ENST00000605371 583 ntBASIC18.77■□□□□ 0.6
CIITAP33076 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.77■□□□□ 0.6
CIITAP33076 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.77■□□□□ 0.6
CIITAP33076 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.77■□□□□ 0.6
CIITAP33076 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CIITAP33076 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CIITAP33076 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CIITAP33076 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
CIITAP33076 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.77■□□□□ 0.59
CIITAP33076 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CIITAP33076 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CIITAP33076 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CIITAP33076 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
CIITAP33076 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 AL627223.1-201ENST00000416693 442 ntBASIC18.76■□□□□ 0.59
CIITAP33076 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.76■□□□□ 0.59
CIITAP33076 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.76■□□□□ 0.59
CIITAP33076 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.76■□□□□ 0.59
CIITAP33076 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.76■□□□□ 0.59
CIITAP33076 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.76■□□□□ 0.59
CIITAP33076 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CIITAP33076 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CIITAP33076 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
CIITAP33076 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.75■□□□□ 0.59
CIITAP33076 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.75■□□□□ 0.59
CIITAP33076 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CIITAP33076 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.75■□□□□ 0.59
CIITAP33076 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.75■□□□□ 0.59
CIITAP33076 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
CIITAP33076 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.75■□□□□ 0.59
CIITAP33076 AC027307.2-201ENST00000591252 911 ntBASIC18.75■□□□□ 0.59
CIITAP33076 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.75■□□□□ 0.59
CIITAP33076 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CIITAP33076 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.75■□□□□ 0.59
CIITAP33076 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CIITAP33076 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.75■□□□□ 0.59
CIITAP33076 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CIITAP33076 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.74■□□□□ 0.59
CIITAP33076 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
CIITAP33076 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CIITAP33076 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CIITAP33076 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms