Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXD3P31249 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 HLA-DRB6-201ENST00000411500 1235 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.93□□□□□ -0.34
HOXD3P31249 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.93□□□□□ -0.34
HOXD3P31249 AC023141.5-201ENST00000458585 616 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC12.93□□□□□ -0.34
HOXD3P31249 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.93□□□□□ -0.34
HOXD3P31249 AC112191.1-201ENST00000523689 701 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 AC109322.1-201ENST00000524499 1264 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 AC087641.1-201ENST00000557561 1021 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.93□□□□□ -0.34
HOXD3P31249 AC025678.2-201ENST00000562061 970 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 LINC00628-201ENST00000628516 1289 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXD3P31249 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 AC131009.4-201ENST00000624048 1740 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
HOXD3P31249 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HOXD3P31249 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXD3P31249 SLC22A20-204ENST00000530038 1673 ntBASIC12.93□□□□□ -0.34
HOXD3P31249 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXD3P31249 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HOXD3P31249 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.92□□□□□ -0.34
HOXD3P31249 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.92□□□□□ -0.34
HOXD3P31249 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 HNRNPFP1-201ENST00000391730 1133 ntBASIC12.92□□□□□ -0.34
HOXD3P31249 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 AL035633.1-201ENST00000406139 838 ntBASIC12.92□□□□□ -0.34
HOXD3P31249 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC12.92□□□□□ -0.34
HOXD3P31249 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 AC092474.2-201ENST00000424288 719 ntBASIC12.92□□□□□ -0.34
HOXD3P31249 BCRP1-201ENST00000444246 691 ntBASIC12.92□□□□□ -0.34
HOXD3P31249 FAM86GP-201ENST00000448322 971 ntBASIC12.92□□□□□ -0.34
HOXD3P31249 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.92□□□□□ -0.34
HOXD3P31249 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
HOXD3P31249 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
HOXD3P31249 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.92□□□□□ -0.34
HOXD3P31249 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.92□□□□□ -0.34
HOXD3P31249 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
HOXD3P31249 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
HOXD3P31249 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
HOXD3P31249 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
HOXD3P31249 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
HOXD3P31249 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXD3P31249 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms