Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.56□□□□□ -0.08
COL8A1P27658 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.56□□□□□ -0.08
COL8A1P27658 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL8A1P27658 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 AL031598.1-201ENST00000561511 1773 ntBASIC14.55□□□□□ -0.08
COL8A1P27658 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 FER1L4-210ENST00000615531 5998 ntBASIC14.55□□□□□ -0.08
COL8A1P27658 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 RNU1-129P-201ENST00000384064 167 ntBASIC14.55□□□□□ -0.08
COL8A1P27658 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.55□□□□□ -0.08
COL8A1P27658 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 AC120057.1-201ENST00000483947 663 ntBASIC14.55□□□□□ -0.08
COL8A1P27658 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.55□□□□□ -0.08
COL8A1P27658 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.55□□□□□ -0.08
COL8A1P27658 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 U1.21-201ENST00000580816 167 ntBASIC14.55□□□□□ -0.08
COL8A1P27658 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL8A1P27658 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.55□□□□□ -0.08
COL8A1P27658 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.55□□□□□ -0.08
COL8A1P27658 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL8A1P27658 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.55□□□□□ -0.08
COL8A1P27658 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC14.55□□□□□ -0.08
COL8A1P27658 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL8A1P27658 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL8A1P27658 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL8A1P27658 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 ANKRD19P-201ENST00000338192 862 ntBASIC14.54□□□□□ -0.08
COL8A1P27658 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.54□□□□□ -0.08
COL8A1P27658 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL8A1P27658 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 AC244517.3-201ENST00000616254 1235 ntBASIC14.54□□□□□ -0.08
COL8A1P27658 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.54□□□□□ -0.08
COL8A1P27658 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL8A1P27658 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC14.54□□□□□ -0.08
COL8A1P27658 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL8A1P27658 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL8A1P27658 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.53□□□□□ -0.08
COL8A1P27658 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL8A1P27658 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.53□□□□□ -0.08
COL8A1P27658 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.53□□□□□ -0.08
COL8A1P27658 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
COL8A1P27658 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL8A1P27658 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms