Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 RN7SL752P-201ENST00000463779 287 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.8■□□□□ 0.12
COL5A1P20908 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
COL5A1P20908 AC008735.3-201ENST00000596646 500 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 AC026979.3-201ENST00000607315 403 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 AC004461.2-201ENST00000629517 803 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 AL033527.5-202ENST00000641632 1098 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL5A1P20908 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.79■□□□□ 0.12
COL5A1P20908 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 SNX29P1-201ENST00000548357 1007 ntBASIC15.79■□□□□ 0.12
COL5A1P20908 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.79■□□□□ 0.12
COL5A1P20908 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC15.79■□□□□ 0.12
COL5A1P20908 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
COL5A1P20908 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
COL5A1P20908 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL5A1P20908 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.79■□□□□ 0.12
COL5A1P20908 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 MIR658-201ENST00000385210 100 ntBASIC15.78■□□□□ 0.12
COL5A1P20908 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.78■□□□□ 0.12
COL5A1P20908 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.78■□□□□ 0.12
COL5A1P20908 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.78■□□□□ 0.12
COL5A1P20908 AP005482.1-201ENST00000563722 1273 ntBASIC15.78■□□□□ 0.12
COL5A1P20908 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
COL5A1P20908 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.78■□□□□ 0.12
COL5A1P20908 AL033527.4-201ENST00000641026 673 ntBASIC15.78■□□□□ 0.12
COL5A1P20908 AL109936.8-201ENST00000641772 604 ntBASIC15.78■□□□□ 0.12
COL5A1P20908 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.78■□□□□ 0.12
COL5A1P20908 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC15.78■□□□□ 0.12
COL5A1P20908 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.78■□□□□ 0.12
COL5A1P20908 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL5A1P20908 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.78■□□□□ 0.12
COL5A1P20908 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.78■□□□□ 0.12
COL5A1P20908 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL5A1P20908 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
COL5A1P20908 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
COL5A1P20908 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.77■□□□□ 0.12
COL5A1P20908 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL5A1P20908 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL5A1P20908 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.77■□□□□ 0.12
COL5A1P20908 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL5A1P20908 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
COL5A1P20908 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL5A1P20908 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
COL5A1P20908 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL5A1P20908 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms