Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PTCHD3P3-201ENST00000403073 906 ntBASIC16.35■□□□□ 0.21
PCNAP12004 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 ELK2BP-201ENST00000415014 1224 ntBASIC16.35■□□□□ 0.21
PCNAP12004 LAGE3P1-201ENST00000425356 484 ntBASIC16.35■□□□□ 0.21
PCNAP12004 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
PCNAP12004 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
PCNAP12004 AC006557.2-201ENST00000592985 1240 ntBASIC16.35■□□□□ 0.21
PCNAP12004 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 PI4KAP1-204ENST00000612579 1703 ntBASIC16.35■□□□□ 0.21
PCNAP12004 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.35■□□□□ 0.21
PCNAP12004 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.35■□□□□ 0.21
PCNAP12004 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PCNAP12004 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.35■□□□□ 0.21
PCNAP12004 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.35■□□□□ 0.21
PCNAP12004 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
PCNAP12004 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PCNAP12004 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.35■□□□□ 0.21
PCNAP12004 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PCNAP12004 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.35■□□□□ 0.21
PCNAP12004 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
PCNAP12004 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.34■□□□□ 0.21
PCNAP12004 FAM197Y8-203ENST00000450145 560 ntBASIC16.34■□□□□ 0.21
PCNAP12004 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.34■□□□□ 0.21
PCNAP12004 RNPS1P1-201ENST00000507437 918 ntBASIC16.34■□□□□ 0.21
PCNAP12004 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 AP002490.2-201ENST00000524791 560 ntBASIC16.34■□□□□ 0.21
PCNAP12004 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.34■□□□□ 0.21
PCNAP12004 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.34■□□□□ 0.21
PCNAP12004 AL121912.1-201ENST00000603683 238 ntBASIC16.34■□□□□ 0.21
PCNAP12004 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.34■□□□□ 0.21
PCNAP12004 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 TP73-AS1-207ENST00000624167 988 ntBASIC16.34■□□□□ 0.21
PCNAP12004 AC107918.4-202ENST00000641623 219 ntBASIC16.34■□□□□ 0.21
PCNAP12004 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.34■□□□□ 0.21
PCNAP12004 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.34■□□□□ 0.21
PCNAP12004 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
PCNAP12004 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PCNAP12004 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PCNAP12004 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
PCNAP12004 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PCNAP12004 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PCNAP12004 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PCNAP12004 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PCNAP12004 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCNAP12004 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCNAP12004 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCNAP12004 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.33■□□□□ 0.2
PCNAP12004 AC004870.1-201ENST00000315132 882 ntBASIC16.33■□□□□ 0.2
PCNAP12004 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PCNAP12004 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.33■□□□□ 0.2
PCNAP12004 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.33■□□□□ 0.2
PCNAP12004 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.33■□□□□ 0.2
PCNAP12004 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms