Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 AC010507.1-201ENST00000633895 436 ntBASIC19.69■□□□□ 0.74
HMGB1P09429 AC007064.4-201ENST00000637740 555 ntBASIC19.69■□□□□ 0.74
HMGB1P09429 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HMGB1P09429 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
HMGB1P09429 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGB1P09429 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGB1P09429 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HMGB1P09429 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HMGB1P09429 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
HMGB1P09429 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
HMGB1P09429 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 RPL13AP23-201ENST00000480739 586 ntBASIC19.68■□□□□ 0.74
HMGB1P09429 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.68■□□□□ 0.74
HMGB1P09429 AC023141.13-201ENST00000604991 943 ntBASIC19.68■□□□□ 0.74
HMGB1P09429 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 IL9RP2-201ENST00000423948 1312 ntBASIC19.68■□□□□ 0.74
HMGB1P09429 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HMGB1P09429 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGB1P09429 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HMGB1P09429 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGB1P09429 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 POU5F1P6-201ENST00000466990 990 ntBASIC19.67■□□□□ 0.74
HMGB1P09429 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGB1P09429 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGB1P09429 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 AL031055.1-201ENST00000606362 631 ntBASIC19.67■□□□□ 0.74
HMGB1P09429 BX640515.1-201ENST00000617215 977 ntBASIC19.67■□□□□ 0.74
HMGB1P09429 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB1P09429 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGB1P09429 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
HMGB1P09429 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB1P09429 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms