Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CXCL1P09341 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CXCL1P09341 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.01□□□□□ -0.33
CXCL1P09341 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.01□□□□□ -0.33
CXCL1P09341 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CXCL1P09341 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.01□□□□□ -0.33
CXCL1P09341 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CXCL1P09341 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 AC041040.2-201ENST00000622926 2899 ntBASIC13□□□□□ -0.33
CXCL1P09341 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13□□□□□ -0.33
CXCL1P09341 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 PBK-203ENST00000522944 1499 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13□□□□□ -0.33
CXCL1P09341 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
CXCL1P09341 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CXCL1P09341 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13□□□□□ -0.33
CXCL1P09341 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 RPS2P55-201ENST00000397318 883 ntBASIC13□□□□□ -0.33
CXCL1P09341 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 AC107956.1-201ENST00000494359 873 ntBASIC13□□□□□ -0.33
CXCL1P09341 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC13□□□□□ -0.33
CXCL1P09341 AL512604.3-201ENST00000569583 964 ntBASIC13□□□□□ -0.33
CXCL1P09341 AC233702.5-201ENST00000584107 538 ntBASIC13□□□□□ -0.33
CXCL1P09341 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 AC113410.3-201ENST00000623366 203 ntBASIC13□□□□□ -0.33
CXCL1P09341 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CXCL1P09341 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 SSR4P1-203ENST00000599569 2260 ntBASIC13□□□□□ -0.33
CXCL1P09341 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13□□□□□ -0.33
CXCL1P09341 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CXCL1P09341 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 AC107918.4-201ENST00000641966 3141 ntBASIC12.99□□□□□ -0.33
CXCL1P09341 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 KRT8P47-201ENST00000604727 1398 ntBASIC12.99□□□□□ -0.33
CXCL1P09341 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CXCL1P09341 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC12.99□□□□□ -0.33
CXCL1P09341 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CXCL1P09341 AC007663.1-201ENST00000438948 1240 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms