Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CLPTM1O96005 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.86■□□□□ 0.13
CLPTM1O96005 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 AC112907.2-201ENST00000448639 330 ntBASIC15.86■□□□□ 0.13
CLPTM1O96005 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.86■□□□□ 0.13
CLPTM1O96005 AC087388.1-201ENST00000571370 1112 ntBASIC15.86■□□□□ 0.13
CLPTM1O96005 MIR3917-201ENST00000580971 93 ntBASIC15.86■□□□□ 0.13
CLPTM1O96005 AL139327.4-201ENST00000612362 153 ntBASIC15.86■□□□□ 0.13
CLPTM1O96005 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
CLPTM1O96005 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.86■□□□□ 0.13
CLPTM1O96005 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.86■□□□□ 0.13
CLPTM1O96005 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC15.86■□□□□ 0.13
CLPTM1O96005 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.86■□□□□ 0.13
CLPTM1O96005 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.86■□□□□ 0.13
CLPTM1O96005 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
CLPTM1O96005 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.85■□□□□ 0.13
CLPTM1O96005 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
CLPTM1O96005 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 AL603832.2-201ENST00000566195 2125 ntBASIC15.85■□□□□ 0.13
CLPTM1O96005 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.85■□□□□ 0.13
CLPTM1O96005 AC034232.1-201ENST00000506026 1064 ntBASIC15.85■□□□□ 0.13
CLPTM1O96005 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.85■□□□□ 0.13
CLPTM1O96005 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
CLPTM1O96005 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.85■□□□□ 0.13
CLPTM1O96005 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.85■□□□□ 0.13
CLPTM1O96005 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CLPTM1O96005 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
CLPTM1O96005 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 AC010491.1-201ENST00000563101 2797 ntBASIC15.85■□□□□ 0.13
CLPTM1O96005 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.85■□□□□ 0.13
CLPTM1O96005 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLPTM1O96005 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 ME2P1-201ENST00000426028 1970 ntBASIC15.84■□□□□ 0.13
CLPTM1O96005 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
CLPTM1O96005 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLPTM1O96005 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.84■□□□□ 0.13
CLPTM1O96005 AC092597.1-201ENST00000487352 616 ntBASIC15.84■□□□□ 0.13
CLPTM1O96005 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.84■□□□□ 0.13
CLPTM1O96005 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.84■□□□□ 0.13
CLPTM1O96005 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
CLPTM1O96005 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms