Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 ELL2P1-201ENST00000413990 1906 ntBASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 AC079781.4-201ENST00000641908 219 ntBASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL4A3BPQ9Y5P4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AP006288.1-201ENST00000446065 395 ntBASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AL031432.2-201ENST00000566714 459 ntBASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AL928711.1-201ENST00000570165 459 ntBASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AP002472.1-201ENST00000577490 586 ntBASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 MIR4515-201ENST00000584082 81 ntBASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AP001160.2-201ENST00000596071 487 ntBASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A3BPQ9Y5P4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 DNAJB3-202ENST00000449667 1266 ntBASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 CEND1P1-201ENST00000451006 455 ntBASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 AC092183.1-201ENST00000469884 875 ntBASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 MIR4492-201ENST00000581627 80 ntBASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 PC-204ENST00000524491 1714 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 AC131009.4-201ENST00000624048 1740 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms